MmuEX0036921 @ mm9
Exon Skipping
Gene
ENSMUSG00000046862 | Pramef8
Description
PRAME family member 8 [Source:MGI Symbol;Acc:MGI:2140473]
Coordinates
chr4:143002329-143006855:+
Coord C1 exon
chr4:143002329-143002994
Coord A exon
chr4:143005252-143005316
Coord C2 exon
chr4:143006543-143006855
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCATCTATTTCTTCCCCTAGACT
3' ss Score
9.82
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TTTCCTTTTCCACGGAGACTATGTTGTCAATCAATACAGAAACAGAAAACGCCCAGACGTGGCGGAAACTCAGTCATCCAATCAGAGGACGGCTTGTGGTTGACAGGCGGGACTACAAACCGGAAATGTGAGACAGAATACGCGGACCGAGCCGGGGGAGGGGCGACCAAAAAGAAAACAAAAAACAAAAAACAAACCGCCGAAAAACAAAAAAATAAAAACCGCTTCAGGCCGGAAGTATAAAACGGAACCCGGAAGTGTGGGACCGGATACGGCTAAAACACTTCAGGCCGGAAGTGCGAGACAGATACGGATGAAAACGCTGCAGGCCGGAAGTGCGAGACGGATGAAAACGCCTCAGGCCGGAAGTTTGAAGTGAAGATGGCTATAAAAGCTTTAGAGAAGCTCGGGAAGACACTCACCAGCACTTGGAGTCCGAGCTTGGACTGACTGCCTGGGCCTGCTGGGATTCTGAGTTCTGCCATCAGTTCTTGTTTCTG
Seq A exon
ACTCTAAAACAACATGGGAAATCCTCTTCTGTGTATTCTCTGTGCATCAAGGTCTTCATCTCAAG
Seq C2 exon
GATCCTTGACACTGAAGATCTGAAGGATGAGTGTCCAGGACCCACCCACACTCCTGCAGCTGTCAGTACAGAGACTACTGAGGGACGAGGCCCTGGCCATTTCTTCTCTGCAGTACCTTCCCAGGGCGCTTTTCCCACTGCTCTTCAAGGAAGCCTTCAATCACAGACAAACTAATGTCCTGAGGGCCATGGTGGCAGTGTGGCCCTTTCCCTTCCTCCCTCTGGGGACCCTGATGAAGACTCCCCACCTGGAGATCTTGCAGGCTGTGCTGGATGGAGTAGACATGCTTTGGACACAGAAGGTTCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046862_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTGGGATTCTGAGTTC
R:
CCTGGGAAGGTACTGCAGAGA
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types