MmuEX0037005 @ mm9
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15695987-15699901:-
Coord C1 exon
chr17:15699778-15699901
Coord A exon
chr17:15699379-15699486
Coord C2 exon
chr17:15695987-15696036
Length
108 bp
Sequences
Splice sites
3' ss Seq
AATATTTTGCTGCTTTTCAGGTC
3' ss Score
9.98
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCAAAGATGAATTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGAGAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCAATAG
Seq A exon
GTCTCAGAGCCCCTAGACCAGCTTTCATGTGTTACCAAAGGCAAGCAATGAAACCCCAAATAAATGACAGTGAGGATTCTGATGAAGAGTGGACACCTAAGCAACAAG
Seq C2 exon
TCAGTCCTCCTTGGGTGCCTTTCCGGGTGAAGCACAGTAAACAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.605 C2=0.494
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=92.9)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGATGAATTCAAAGACATTTCCA
R:
TCTGCTGTTTACTGTGCTTCACC
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: