MmuEX0037452 @ mm9
Exon Skipping
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23979212-23980577:-
Coord C1 exon
chr17:23980409-23980577
Coord A exon
chr17:23980167-23980310
Coord C2 exon
chr17:23979212-23979492
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCTTACCATTGGCCCTGCAGGGG
3' ss Score
8.14
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TGCCCTGTGGCCGCCGGAATGACACTCGGTCCCGGATAGTGGGCGGGATAGAATCCATGCAAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGCTTGAAGAAGTCCCACCGCTGCGGAGGGAGCCTTCTCAGCCGCCGCTGGGTGCTCACTGCTGCACACTGCTTTAGAAA
Seq A exon
GGGGCGCCACTCTAATTCTTCCAGGATGTTTTATTCAAACATTCCCATGCTGTTTCGGGTCTATTCATCTATGCTCACTGCCCCCTACCATATCGAATTAGGAAGGCGCAGGTCTCATTCCACCTTCCCTTGGAGGTTCCCAAG
Seq C2 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGGGTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-'4-4,'4-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=77.2)
A:
PF0008921=Trypsin=PD(26.2=32.7)
C2:
PF0008921=Trypsin=PU(47.9=95.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCTGCACACTGCTTTA
R:
GGACGTAAAGGTGGAAGGCTG
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types