MmuEX0037795 @ mm9
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103921242-103930931:+
Coord C1 exon
chr5:103921242-103921329
Coord A exon
chr5:103925342-103925424
Coord C2 exon
chr5:103930386-103930931
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTGTTTATTTGTAGCTC
3' ss Score
8.55
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
ACGGATCCACTTTCCCGTAGCAGTGAACAAAAACCTGACCGGAGCCAGGCCATTCGAGACCGACTGAGAGGAAAAGGATTGCCCACAG
Seq A exon
CTCTTCACTCGATGTTCCTTCCTCCCTGTTTGGATTTGAGCAAACTGTGCCGTCTCCAGAAGGAAAGCATTTGTGTCTTCATG
Seq C2 exon
GAAGAAGCTCCACTTCAGACGCACTAGACACACACGAGGCTCCACTCTCTCAGCAGACCTTTCTTAACAAAGGGCTTAGTAAGTCTATGGGATTTCTGTCCATCAGAGACACACGAGATGAGGAAGACTATCTCAAGGATACTCCATCTGATAATAATTCCAGGCATGAAGATTCTGAGACTTTCTCTTCCCCTTACCAGTTCAAAACTAGTACTCCACAGATGGATGCACTCTCCAAGAAGAAGACATGGGCTTCCTCCATGGACTTGCTCTGTGCAGCTAACAGAGACATTTCTGGAGAGACGGGCAGGTACCAACGCTGTGACCCTGAGACAGTGACAGGACGGACGTCCATCACTCCTAGAAAAAAAGAAGGAAGGTACTCTGATGGAAGCATTGCCTTGGATATCTTTGGCCCTCAGAAGGTGGAGCCGGTGATCCACACCCGAGAACTGCCGACCTCCACCGCGGTATCAAGCGCTTTGGACCGAATTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=0.000 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAAAACCTGACCGGAGCC
R:
TCTCGTGTGTCTCTGATGGACA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: