MmuEX0038232 @ mm9
Exon Skipping
Gene
ENSMUSG00000091474 | RP23-147O14.2
Description
RIKEN cDNA 2610021A01 gene [Source:MGI Symbol;Acc:MGI:1922662]
Coordinates
chr7:48854631-48858904:+
Coord C1 exon
chr7:48854631-48854770
Coord A exon
chr7:48857118-48857185
Coord C2 exon
chr7:48858210-48858904
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTTTGAAACTTACAGTGA
3' ss Score
4.14
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GCGCAACTTCTTGGATCCAGATGTAGTTTCCTGCTAGGACCGCTTGTGCTTGGAGGCTGGACCGTTGGGGTTGTGCATGTCTGCGGGTGGACTTGGTGCCCCACGTGCTTTGTGCCGGGCTCTGTGAGTTGCAGCGTGAG
Seq A exon
TGACAACATGGTATGTGGTATGTGGTGCTTTCTGTGCACGGCCCAAGCCGACTGTTCACCTAACCTCA
Seq C2 exon
GAAAACATCACAGCTCTGAAACTTGTGTACGGTTCCAGGTGTGCCCGGAGTGTCTTGTTACCAAGTTATGCAAAGGCTGTTAAGGTTTTCCAGAAAGACAACTCTATAGACAACAGAAAACAACCAGTGTTTTCTACAGTGATTTCTTTAAGGTCAAAGTACGTACAACTTTCATTCCGATATCTATTCTAGAGATAGTGAAAAGCCTCTATTTCATCATAACGATTACTTTAGATATAATAATCCTACTAGAATTCCTACTATAAAAAATGAACTTTAAATCTCACCGTGCGTCCTGCATTCTGCAGACTGAGCTGTGTCGCATGCACCCTTGATCCTCTGAGAAGCCTTGCCTCAGTGGATGTCAGAGACAAGCAATTAGGAAAGCTTGAGCGCCCCCTTTAAACATTAGGGGAGTGGTTAAACAGTTACCATCCAATCTCTACAGGAGATGAAGGCAAACTAAGTGAGTGTGGTGTCTGGATGATGTGCCAAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091474-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAACTTCTTGGATCCAGA
R:
CACACCTGGAACCGTACACAA
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: