MmuEX0038233 @ mm10
Exon Skipping
Gene
ENSMUSG00000091474 | 2610021A01Rik
Description
RIKEN cDNA 2610021A01 gene [Source:MGI Symbol;Acc:MGI:1922662]
Coordinates
chr7:41599261-41611925:+
Coord C1 exon
chr7:41599261-41599400
Coord A exon
chr7:41603436-41603534
Coord C2 exon
chr7:41611676-41611925
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTATCTTTTTATAGATG
3' ss Score
8.5
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GCGCAACTTCTTGGATCCAGATGTAGTTTCCTGCTAGGACCGCTTGTGCTTGGAGGCTGGACCGTTGGGGTTGTGCATGTCTGCGGGTGGACTTGGTGCCCCACGTGCTTTGTGCCGGGCTCTGTGAGTTGCAGCGTGAG
Seq A exon
ATGTTAAAGTGACACCAAGGACAGTGCTGTTGGCGGATGGAGGTTGACCGTCTACCTTAACAGCAAAAGTATTTTACAATACAGAGAGCTCATGTTTTG
Seq C2 exon
ATCCTAAACAGATGTTTCAAGATGCTGTGCCCTTATGTGCCTGATGTCCTTATGTGGGTGAAGAGGATTCCAACCTGGAGCCTGGACCCAACACAGAAAAGCCCATAACCTGTGGTCCTCACCACCTCTACAGCAGTGAAGGTCGCCAGTGTCACCCTGTGGATCCACCACACCCAGCTGAAGAAGGCTCCAGGAGATAACAGAGATGGGTGGTCACCAGGTCCTCCAACTCCCTAAAGATAGGACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091474_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAACTTCTTGGATCCAGA
R:
GCACATAAGGGCACAGCATCT
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types