MmuEX0038906 @ mm9
Exon Skipping
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32536235-32540528:-
Coord C1 exon
chr17:32540001-32540528
Coord A exon
chr17:32539381-32539452
Coord C2 exon
chr17:32536235-32536374
Length
72 bp
Sequences
Splice sites
3' ss Seq
CATTTATTTATTTATATTAGAAA
3' ss Score
5.27
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACGGCTGCTGGTTCTGGACTGGCCAGGAAATCAAGGTAAGGGAGGGTGTACGTGTGGCATCCTCAAGTATGTTCCTGGAGGCGAAGCTGAGAAGAGACCAGGGAAGATGAAGCCAGAATGTGGGCAGACAATGTTCAGAACCTTTTGGTCTCGCAGCAGAGACTCCTCCGCCATGGACCCACCGTTGCAGAGTGAAGAAGATTCCCAAACGCAGCCCTCGCTGCCCTCTCCGCTGACATCCTACCGCTGGCACACTGGAGGCAGTGGGGAAAAGGCTGCTGGAGGGTTCCGCTGGGGCCGCTTTGCAGGCTGGGGAAGGGCCCTGAGCCATCAGGAGCCCATGGTGAACAGCCAGCCAGCCCCCAGATCTCTGTTTCGTCGGGTCCTCTCTGCACCCCCTAAGGAGTCACGGTCCAATCGCCTCCGGTTTTCCAAGACCCTGTGGGGAAGGCACAAGAACGTGGCACCACTGGAACCCAAGCCAAATCCGAAGGCCCCAG
Seq A exon
AAAGGAGCAAGCAAGCCATGGTTCCTGGAGTCAAAGGACAACTTTCAGGAGTCAGTTCTCTCCTTCAATTAC
Seq C2 exon
AGCCAGAGCTGGAGTTGGTAGCAGACCCAGATCTACCCGTTGCACAGATCCCTGAGCCTCCCACCCCGGACATGCCTGTTTGGAACATTGATGGCTTTACCCTTCTCGAAGGAAAGCTGGTGATGCTCGGTGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.600 C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGTTTCGTCGGGTCCT
R:
CTGTGCAACGGGTAGATCTGG
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: