MmuEX0039214 @ mm9
Exon Skipping
Gene
ENSMUSG00000031134 | Rbmx
Description
RNA binding motif protein, X chromosome [Source:MGI Symbol;Acc:MGI:1343044]
Coordinates
chrX:54644744-54646158:-
Coord C1 exon
chrX:54646029-54646158
Coord A exon
chrX:54645873-54645974
Coord C2 exon
chrX:54644744-54644878
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGACTTGTTAGAGCTGGATGTC
3' ss Score
-28.64
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
CTCGTTGCGCAGTCGTCCTAGCGTCATTTCTGTTCCGTTCTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCGGGAGGTCCGGTCGGCGAGCTCAGAGGAGCTTGAGACCGTCGCAGTCCCCTCGG
Seq A exon
GTCATTTGTTTCCCGGGAGATAGTGGCGGCGGGCGCCATTTTAAGACACCCAAAGGTGTCAACCTATTTAAAGCAGAAGGGGTGGAAGCAGCACATTATGGG
Seq C2 exon
CAGACCCCCATCGGTTAAGAGGAAAAATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCCTTGAGGCAGTGTTTGGCAAATATGGACGAATAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031134-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.211
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=73.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCGTCCTAGCGTCATTT
R:
TCCATATTTGCCAAACACTGCCT
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: