MmuEX0040220 @ mm9
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33466344-33491228:+
Coord C1 exon
chr4:33466344-33466412
Coord A exon
chr4:33479690-33479746
Coord C2 exon
chr4:33491128-33491228
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTGTCTCTCAGTTT
3' ss Score
9.88
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTTCTGGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTTCAGCCTATTGGA
Seq A exon
TTTTCCTTCATGTGCCACCTAGGTATGTTTATTTCCCTGGAGAAGCTTCACTGACAG
Seq C2 exon
AAATACAAGCCTGGTCGATGTGATGACATTTTGAAATGGAAACCTCCCAGTCTAAACTCTGTGGATTTTCGACTTAAGATAACAAGAATGGGAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'18-22,'18-19,20-22
Average complexity
S
Mappability confidence:
82%=100=67%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
A:
PF0133114=mRNA_cap_enzyme=PD(2.8=27.8)
C2:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(19.3=50.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGAAGGAAATTTTGCCA
R:
TCCACAGAGTTTAGACTGGGAGG
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types