MmuEX0041077 @ mm9
Exon Skipping
Gene
ENSMUSG00000038095 | Sbno1
Description
sno, strawberry notch homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2384298]
Coordinates
chr5:124864408-124875581:-
Coord C1 exon
chr5:124875456-124875581
Coord A exon
chr5:124869820-124869896
Coord C2 exon
chr5:124864408-124864536
Length
77 bp
Sequences
Splice sites
3' ss Seq
AGATCTTTCTGTATTCTCAGGTT
3' ss Score
7.42
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGGAGGTAGGCAGAGCCAGACGCCGCTTCTGCCGCCGCCGCCGCCGCCTCCGCTCCTGTCGCCTCCGGCTCCTCACCCGTTCGCGGACCCGGAGAAGCTATCCTTGGGTCGGCCCCGGCGGGGAAA
Seq A exon
GTTTGTCAAAATAATAGGACCAGGGAAATGGCTCTTGCTGAAAAACCTGACCATCTGAAATTGATCCCATTGGAAAG
Seq C2 exon
ATGGTGGAACCAGGGCAAGATTTACTGCTTGCTGCCTTGAGTGAGAGTGGGATTAGTCCGAATGACCTCTTTGATGTTGATGGTGGAGATGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038095-'1-3,'1-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.674
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCGGAGAAGCTATCCTT
R:
GTTGAACTGAAGGGGGCGTAG
Band lengths:
169-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: