MmuEX0041090 @ mm9
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:79535102-79545471:-
Coord C1 exon
chr10:79545360-79545471
Coord A exon
chr10:79542698-79544127
Coord C2 exon
chr10:79535102-79535263
Length
1430 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCTTCTGATGCCAGAGG
3' ss Score
4.84
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACAGTTCGTGGGTTCCACCCCATTCCTTGGTGGCCAGTCTTGCCCTGAAACCAGCTACCCCACCACAGCCACCGTCCCCAGCTTCTTCTCCAAGAGCAGCGACTTTCCTCAG
Seq A exon
AGGCCCACATCTGCCTCCCTGTGGCCAAAACTCCCAAAGGTGAGCTCCCCCGCCCCTCTCCTGCCAGCTGTGCTCACGTGATCTGCTTGTCTGAACCCCATTTGTCACACACATCTGGCAACGTGGTGGCTGCCTGTTATCTCTCACTGGCAGATGGGCATCACCATCCATTGGGTGAGCATTTATTGAACACTTGGTGTTTGTGTGTCCTGTACACACTGCCCCCTGAATGCCTGTGGAGGGGCCTACCCTCATGCCTGTCACCCTGTCCACAGAAGGTTGGACCAGGGGATTCTATCCTAGCCTCTGGCTATGGGCCTGAGCTTGTCACCTGCCTCTACCTCCCTCATCTCCCCAGGCCATGGATGGCCTCGGATTCCACAGAACAAGAAGGAGCCAGACCTGAGCCAAGCCTCACCACAGGTCAGAAAGGACATGAAGAGTGGCTTAAGTGAGGTCCCTGAGCTGGGGACATCTCCCTGAGGTCCTCAGAGGCCCTGCTCCGTGCCCTCCACAGGGGAAGGGCTGAGCGTCCTGGAGATGTGGGTGTGGCCCAGCCCCACCCGAGTGGGCGTGGATCCGCCTTGCATGTGGCTTCAGGACATAGCTTTCCACAGTTTGTTCCAGTGGCAAGAAAGCGGATACCCTCATGCTACCTCTGTGCTCCGTGTGGTCATGTTTCCTACCGTGGTGTGAACCAGGAGTCAACAGAAAACCCACCTCTGCTTGGACCCAGAGCTAGGAACTAACCATGAGCCCCGAGTTTCCTGGCAGAAGAAGCAAAAAGAGAAAGAGATGAGTCACATGACTGACCCGTACACGAGGAAAGTCTGTGGACGGCTTCCTGTGTTCTCACTCTCCACTCAGGAAGCCAGGCAGGAGGACGGAGGTTTTAGGTGTTCCTGGGCTATATCCTCAAAGTCTGTCTCGAAGCAACGAGAAAACTAACAGAAAGAGAAATAGAAGAAACCAAATATTGTCTGCCATTCAGTCTGTCCCTTCCCTGTGGGTAGGAGCCTCCTGTGCACTTGCATCTTGAAAGTCGCCTCTGATGTCTGCCATCTTCTGCTCTTCGTCCTTCTGCTGTGAGCTGTGGGAACCCTTCCCACAGCATACATGTCCCACAGTGCTGCATAACTTTGACCCTTGGGGCCCCAGTAGCTGCTGACTGGACCCAGCACAGCACACACTGGTCATTTCAGGATCCCACAGAGTGTCTTGAGTGCCTGACAGTCCCTGGAGCCCTGCCTTCCTTTGCAGCCGGCCCCAGCCCTCAGCCTCCTACTTCTACAAGGGAAGGGCCCGTGCACTCCTGCTCAGCCCTCCATCTCCAGGTGGCATGGAGCCCTCCCCATAGGCTCTGATAGCCCTGCTCGGTGACCGGAACAGCTCCACAGTCCCCTGTGGGAATACCCACCCTGGGCGTGCAG
Seq C2 exon
GACCCCTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCTTCATCTGTGGATTCCCTGTCAGACATCCCAGACACACCTGACTTCCTGCAGGCTGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCAACTACCCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.077 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCACCCCATTCCTTGGTG
R:
TTGTCATGGGTAGTTGAGGTGG
Band lengths:
262-1692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: