MmuEX0041453 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159481138-159483175:+
Coord C1 exon
chr1:159481138-159481255
Coord A exon
chr1:159482150-159482244
Coord C2 exon
chr1:159483064-159483175
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTTCACTCCTAGATC
3' ss Score
10.35
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTTTGTGGAGACAAACAGTGGGGAGACTGGCGGCCCCACTTGGCTGTGATCCTGTCAAATCAGGCTGGAGATACAGAGTTGTACCAGCGAGCGATTGTCAGCATGGGGGATACCCTGG
Seq A exon
ATCCTAGCCCAGAGGATAGTGCCTCCCACACTCCAAATGAGTCCTCCCGATTCAGTTAAACCTTTCTGGAAGCACCCTGAAGGTCACACCCAGAG
Seq C2 exon
CTGGAAAAGGGCTTGTGGAGGCATCTCACTTCTGCTATCTCATGGCTCATGTGCCCTTTGGTCACTATACGGTGAAGACAGATCATCTGGCCTTGGTGGGCAGTAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.008 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(15.9=100)
A:
PF129312=Sec16_C=PD(8.2=50.0)
C2:
PF129312=Sec16_C=FE(15.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTGGCTGTGATCCTGTC
R:
CCACCAAGGCCAGATGATCTG
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types