MmuEX0042129 @ mm9
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32583226-32593078:+
Coord C1 exon
chr2:32583226-32583326
Coord A exon
chr2:32588312-32588445
Coord C2 exon
chr2:32593039-32593078
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGAGCATCATGGCCTTCCAGGCA
3' ss Score
4.82
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCTTAGCGGGAGTGTTAGACTGAGCCGGTTCCTGGGCTTCAGGTTGTGATCACGGGATGACTGCAGTGGGCCGAAGGTGCTCTGCGCTAGAGCCCCGAAG
Seq A exon
GCACACATGATGTCCCCTCAGAAGATGAGGAAGCCAAGCCTCAGAGAGAGGGAAGCAGGTGTCAGAGCTGCGAATCTCTTCTCGGGCCTTATGACCAGACCCTAAGGCCCAAAGGAAGAAGCTCAGGACAGAGG
Seq C2 exon
GACTGCTGCAGAGCTGGAGGCCGCTGGGGACTATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013-'2-4,'2-2,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGCGGGAGTGTTAGACTGA
R:
CTTCACATAGTCCCCAGCGG
Band lengths:
140-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: