MmuEX0042194 @ mm10
Exon Skipping
Gene
ENSMUSG00000037062 | Sh3glb1
Description
SH3-domain GRB2-like B1 (endophilin) [Source:MGI Symbol;Acc:MGI:1859730]
Coordinates
chr3:144699854-144705605:-
Coord C1 exon
chr3:144705513-144705605
Coord A exon
chr3:144701808-144701846
Coord C2 exon
chr3:144699854-144699877
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTCTCACCTATGCACTTAAGCAA
3' ss Score
0.47
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
AAAGAAAGGAAACTATTACAGAATAAGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAAAGTTCA
Seq A exon
CAACTAAACTCCGCCCGCCCTGAAGGAGATAACATTATG
Seq C2 exon
ATTTGGGCAGAGGAAGTGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037062-'15-15,'15-14,16-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.213 A=0.216 C2=0.062
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.2=100)
A:
PF0311413=BAR=FE(4.5=100)
C2:
PF0311413=BAR=FE(2.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAGAGACTGGATTTGGATGCTGC
R:
TTTTGTCACTTCCTCTGCCCA
Band lengths:
96-135
Functional annotations
There are 2 annotated functions for this event
PMID: 24523556
HsaEX0058019 and HsaEX0058023 are often included together. This splice isoform is associated with increased neuronal viability and mitochondrial elongation. The mitochondrial effect is associated with mitochondrial maintenance and function. Loss of this isoform is suggested to render neurons more susceptible to apoptotic stress.
PMID: 29759485
Isoforms 1b + 1c (represented by joint inclusion of this event and HsaEX0058023), show an antiapoptotic effect in human androgen-sensitive prostate cancer cell lines, while isoform 1a (corresponding to skipping of both exons) shows a pro-apoptotic effect. Isoforms 1b and 1c are up-regulated in patient-derived samples of treatment-induced neuroendocrine prostate cancer, which is a very aggressive and metastatic form of prostate cancer characterised by increased expression of SRRM4 (ENSG00000139767), a known master regulator of microexon inclusion in neuronal-related cell types. In contrast, prostate adenocarcinoma samples predominantly express isoform 1a.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types