MmuEX0042985 @ mm9
Exon Skipping
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:74104044-74104775:+
Coord C1 exon
chr8:74104044-74104113
Coord A exon
chr8:74104509-74104600
Coord C2 exon
chr8:74104666-74104775
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGACTTAGCTCTCCCTGCAGGTA
3' ss Score
8.83
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCGGCTGTTTTACATCTATACTTCTGGGACCACCGGGCTTCCTAAGGCTGCCATTGTGGTGCACAGCAG
Seq A exon
GTACTACCGCATTGCTGCCTTTGGCCACCATTCCTACAGCATGCGTGCCGCCGATGTGCTCTATGACTGCCTGCCACTCTACCACTCTGCAG
Seq C2 exon
GGAACATCATGGGTGTGGGGCAGTGCGTCATCTACGGGTTGACGGTGGTACTGCGCAAGAAGTTCTCCGCCAGCCGCTTCTGGGATGACTGTGTCAAGTACAATTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-'10-11,'10-9,12-11
Average complexity
S
Mappability confidence:
100%=80=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.3=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTATACTTCTGGGACCACCG
R:
CGTGCAATTGTACTTGACACAGT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: