Special

MmuEX0043418 @ mm9

Exon Skipping

Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15535539-15561797:+
Coord C1 exon
chr14:15535539-15535794
Coord A exon
chr14:15540173-15540259
Coord C2 exon
chr14:15561716-15561797
Length
87 bp
Sequences
Splice sites
3' ss Seq
TATTACTTATTTTCTGTCAGATT
3' ss Score
7.95
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGGCGCCGCTGCCTCCTCCGCGCCGCGTCCTCTGCCCGTCTCAGTCCTCGCGGCACGCCGTTGCCTCTCTCTCCCGGAGAACGTCCCGCGCTCGCAGCGGTCGCCGCACTCCGGGGCCAGCTCTCGGCGGCCAGCGCTCCGCACAGGGTCTCCCTCCGCGTGCCCGTCTCTGCTGCGGTCGCGGCCTCTCAGAGCTCCGGGGCGGGCCATGGAGGCAGACGGGGCCGGCGAGCAGATGAGACCGCTACTCACGCGG
Seq A exon
ATTGCCGAGTCTGAGAAGCTGTTGATTGTAGATCGTTTCTGATGAGAAATCTGAGACTGTACCCCTGAAAGTACACTTACTTTCAAG
Seq C2 exon
GGTCCAGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.882 A=0.000 C2=0.893
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000058313f1078A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000058313f1079A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000058313, ENSMUSP00000088071, ENSMUSP00000128870
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:27519470-27519559 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr22:1873549-1873624 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTCCGCACAGGGTCTCCC

				
R: 
ACTTGGTGTTCACAGTTGAGCT

				
Band lengths: 
181-268

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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