MmuEX0043434 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100800480-100803348:+
Coord C1 exon
chr15:100800480-100800641
Coord A exon
chr15:100801423-100801554
Coord C2 exon
chr15:100803235-100803348
Length
132 bp
Sequences
Splice sites
3' ss Seq
GAACACAAAGATCTCTGCAGGGC
3' ss Score
-1.41
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GAATGCCAGGAGATGCACGGGGAGTTCATGGGATCTGCCTGCGGTCACCACGGACCCTACACGCCCGACGTGCTCTTTTGGTCCTGCATTCTGTTCTTCGCCACCTTCATCGTCTCCAGCACCTTAAAGACATTTAAGACAAGCCGCTACTTCCCGACCAGG
Seq A exon
GGCCAGCGAGAGGGCTCAGTGGGTGAAGACGCTTGCTGCCAAGCCTGATGACCTGAGTTCAGTCCCTGAGACCCACACGGTAGAGAGAGAACAACTTGCTCAGGTTGTCCTATGTGTGCACATGTACACAGA
Seq C2 exon
GTCCGCTCCATGGTGAGTGACTTCGCCGTGTTCCTCACCATCTTCACCATGGTGGTCCTTGACTTTCTGATTGGCGTCCCGTCGCCAAAGCTTCAGGTTCCCAATGTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=PD(1.7=31.2)
C2:
PF0095516=HCO3_cotransp=FE(10.9=100)
Main Inclusion Isoform:
ENSMUST00000023776fB3791
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCACGGGGAGTTCATG
R:
GGAACCTGAAGCTTTGGCGAC
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types