MmuEX0044488 @ mm9
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36151161-36153996:+
Coord C1 exon
chr15:36151161-36151321
Coord A exon
chr15:36152746-36152785
Coord C2 exon
chr15:36153864-36153996
Length
40 bp
Sequences
Splice sites
3' ss Seq
ACAGTTCTTGTTCCTGTTAGTGT
3' ss Score
5.77
5' ss Seq
AATGTGTGT
5' ss Score
2.42
Exon sequences
Seq C1 exon
AATAGCACGAATCTTAACAGAGCTAGATGGATCAAAATGGCGGGAGAGACTGCCACCCATCCCAGCTGTACCCACATCTGAGCCACTGCGAGTTTGGCTCCCTGCTGCAGAGACCCCAGACCAAGATCCCTGTCCCAACAACTGCATGCCGAGCATCACAG
Seq A exon
TGTTTCCAGATTGCCAGAGGGGAAGAGAAGACATGGCAAT
Seq C2 exon
ATGAAAAAATGTTTCAAGCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAATGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.071 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134141=TPR_11=PU(61.8=93.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAGCTGTACCCACATCT
R:
TCCTTCTTCCTTGAGGGCTTGA
Band lengths:
138-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: