MmuEX0044596 @ mm10
Exon Skipping
Gene
ENSMUSG00000005233 | Spc25
Description
SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913692]
Coordinates
chr2:69205026-69206194:-
Coord C1 exon
chr2:69206064-69206194
Coord A exon
chr2:69205830-69205882
Coord C2 exon
chr2:69205026-69205178
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTTCCGCCCTGCAGGGG
3' ss Score
11.57
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGAGTTTGAAATTGAAAGACTGCGCGCTGGAGGAGCAGCAGACCCGGGAGCAGCAGACGGAAGAGCGGCGGGCTGGTTCCTGCCGGACAGGTCCAGTCTGGTGGAGACCGCGGCGTTCCTGGCCGCTCAG
Seq A exon
GGGGAGGAGTGGACGGAGCAGTCGGCCAGGGGTCTGATGCAGAAAACCTGCAG
Seq C2 exon
TGTCTTAAAACATAATGGGTGAAGACGAATTGGCACTCTTAAATCAAAGCATCAATGAATTTGGGGATAAGTTCAGAAACAGACTCGATGATAATCATAGTCAAGTGCTGGGACTTAGAGACGCCTTCAAGGACTCCATGAAAGCGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005233_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.032
Domain overlap (PFAM):
C1:
PF148171=HAUS5=PU(4.5=15.6),PF083176=Spc7=PU(0.7=3.1)
A:
NA
C2:
PF083176=Spc7=PU(27.3=93.6),PF101864=Atg14=PU(29.9=87.2),PF148171=HAUS5=PU(24.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGCAGCAGACCC
R:
AGTGCCAATTCGTCTTCACCC
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types