MmuEX0045131 @ mm9
Exon Skipping
Gene
ENSMUSG00000022885 | St6gal1
Description
beta galactoside alpha 2,6 sialyltransferase 1 [Source:MGI Symbol;Acc:MGI:108470]
Coordinates
chr16:23224813-23234122:+
Coord C1 exon
chr16:23224813-23225302
Coord A exon
chr16:23226094-23226252
Coord C2 exon
chr16:23234022-23234122
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCTAGCTTGCTGAAAGAATAGT
3' ss Score
-15.17
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCAAAGGCTTGCTCTTTGTGGACAGACTGCAAGATTCCCTGCATTACGGGGAGCCCTAAGCAGGCACCTTTAACCTTGAGCCTGCTCGCTAGCGACCTCCAGAGGGCCAGGATGGTTTGGGACCGGTGTGATAGAGCACTTTTCTAGTTTTAACGACTCTATTTGCATAACGGAGACCAAGCGTCCTCCCGCCGGTCTGCCGTGCTTTTCTTCCCTCCTTCCCGGTCCTCTGTACCCTCATCTGTGCTCCCTCTCTGCTTCCCAGAAGATCCGTTCTCAAGGGGACTCACTCGGAGCTTGAGTCCCGGGCTCTTCTCCCTCGGCCCGGCAAGATCCAGAGGCACCTGGGGGAGTGGAGTTGAGCGCCAGCCTGGGTTGGGGAGCCGCCCTGGCACTGCCCGACCCTAACAAAGGGAATCGGACTGCGCGCCGTGCGAGCGCTCGGTGGGCTCAGCGACCGCAGCCGCCTTCCCGATTGAGAGAGCTGCAA
Seq A exon
AGTTCATTTTAACAAAATCCACCAGTGAGGTCTTGGGTTTTGCTTGCTCTTCGCCTGGGAGCTCCCTGTGGCTAGACATTTCAGGTGTCACTGGCCCTGGCCACACAAGGCCAACGGGGGCCCCTCGTCTAGACGGGGACGTATCGGAGGCTCGCAGAG
Seq C2 exon
AAATAAATATACCATATATGCTTTAGATGACCAGGAAACCTGGCCACTGGGAGAGAATGATGTGTCCCAGGAGGGTGACCATGGAATTCTTTTCCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022885-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGTCCCGGGCTCTTCTC
R:
ATCATTCTCTCCCAGTGGCCA
Band lengths:
255-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: