MmuEX0045195 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86370078-86381838:-
Coord C1 exon
chr10:86381761-86381838
Coord A exon
chr10:86379133-86379254
Coord C2 exon
chr10:86370078-86370176
Length
122 bp
Sequences
Splice sites
3' ss Seq
CATGATTGTTCTCTTCTTAGCCC
3' ss Score
7.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATATCACAATTGAGGGGGCATCCTTTGTGGATGGTGACAATGCAGCCACAAACGGGGTGGTCCACATCATCAACAAG
Seq A exon
CCCTTGGATTGTGCTACTCCCTCAAGAACTCCTCTTGTCAACTGGCATCATGCCACCTTTGCTAGTACCAACATGATGTATGGTTATGTAGGCTGTGTGCTGCATAAAGGTGGAGCCAACAG
Seq C2 exon
GTGCTAATCCCCCAAAGAGGTCTAACTGGCTCCTTACCCAGTCTACTCACCCGTCTGGAACAGATGCCTGACTATTCCATCTTCCGGGGCTACATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'32-37,'32-36,34-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(20.0=100)
A:
PF0246917=Fasciclin=PD(2.4=7.3)
C2:
PF0246917=Fasciclin=PD(2.4=9.1),PF0246917=Fasciclin=PU(8.3=30.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAATTGAGGGGGCATCC
R:
ATGTAGCCCCGGAAGATGGAA
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: