MmuEX0046407 @ mm9
Exon Skipping
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36913945-36928906:-
Coord C1 exon
chr5:36928707-36928906
Coord A exon
chr5:36927431-36927485
Coord C2 exon
chr5:36913945-36914686
Length
55 bp
Sequences
Splice sites
3' ss Seq
TCACTTTGTTTTTGTTTCAGACG
3' ss Score
9.78
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGGAAAAGACTGGGTTTGGGAAGGGCTCTGAGGGCCTTCTGGCTGGAGACGATGGACAGAGACAGCAAAGCCCCGGGGTGGCATGTGAACCTACTGTTACTGTAACCATGCTATGCCAAGAGCCAGTGGCATGGGAGGCAGGTTTGGGCTGGGCAGGACCTGACCTGGGGAGAGTGAGCTAGATCTGCGACACCACGG
Seq A exon
ACGCAAGTTACAATGAGGCTTTATCTAGACCGCTTCTGGGGACTGATGGCAAAAG
Seq C2 exon
TTTCTTCTGGGACCAAGATGACTGATGGAAACCTTTCCACCTCGATGAATGGTGTAGCATTGATGGGCATCCTAGATGGTCGGCAAGGAGACTCCCTTCAGGACCTACAACACCTTAGTATCAAGGCGGCTCCCAGATCCCTTTCAGTGCCTGACTACGGACCTTCACTAAAACTTGGTGCTTTGGAAGATCGACACAGCCTTCAATCAGTGGACTCGGGCATTCCTACCCTGGAGATTGGCAACCCAGAGCCTGTTCCCTGCAGTGTGGTCCATGTGAAGAGAAAGCAGTCTGAGTCAGAGATCGTCCCGGAGCGGGCCTTCCAGAGTGCATGCCCGCTGCCGTCGTGCACACCCTCAGCTCCCACCTGCAGCGAGCGGGAGCAGGTTGTGCGGAAGTCTTCCACATTTCCTAGGACAGGCTATGACTCAGTGAAACTCTACAGCCCCACCTCCAAAGCCTTGAGCCGAAGTGACAATGTCTCTGTCTGCAGTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-'2-16,'2-5,5-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.320
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(30.3=23.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGGGAGAGTGAGCTAG
R:
TCCTGAAGGGAGTCTCCTTGC
Band lengths:
140-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: