Special

MmuEX0046409 @ mm9

Exon Skipping

Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36850227-36851080:-
Coord C1 exon
chr5:36851009-36851080
Coord A exon
chr5:36850595-36850704
Coord C2 exon
chr5:36850227-36850355
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTATTCCTGTGTTTAACAGATG
3' ss Score
8.39
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGTGGTCCGTATCATGACATGTTGCACAGTATTTTGGGCGCTTATACTTGTTACCGGCCGGATGTGGGTTAT
Seq A exon
ATGTGTATATGTGCATGGTCTTAAGCCTGCTAAATTCATATGTGTGACCACAGCACCACACCCAGCATGGCACATACCAGAGGGTAATATTTCAGATGTCAAGGCCTATG
Seq C2 exon
GTTCAGGGCATGTCCTTTATAGCTGCAGTGTTGATCTTGAACCTCGATACTGCAGATGCCTTTATTGCTTTTTCTAATCTTTTGAATAAACCCTGTCAAATGGCGTTTTTCCGAGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-'36-36,'36-35,37-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)

							
A:
PF0056613=RabGAP-TBC=PD(1.0=12.5)

							
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000116519f2543A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000116519





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000031094, ENSMUSP00000098830, ENSMUSP00000114508, ENSMUSP00000115926, ENSMUSP00000117414, ENSMUSP00000119347, ENSMUSP00000121516, ENSMUSP00000121816, ENSMUSP00000131876
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr4:7012011-7012126 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr6:118289274-118289296 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGTGGTCCGTATCATGACATGT

				
R: 
GCCATGGTCCACTCGGAAAAA

				
Band lengths: 
198-308

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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