MmuEX0047050 @ mm9
Exon Skipping
Gene
ENSMUSG00000038482 | Tfdp1
Description
transcription factor Dp 1 [Source:MGI Symbol;Acc:MGI:101934]
Coordinates
chr8:13369459-13370646:+
Coord C1 exon
chr8:13369459-13369580
Coord A exon
chr8:13370269-13370274
Coord C2 exon
chr8:13370481-13370646
Length
6 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCCTGACATTTAAAGGCA
3' ss Score
5.4
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGATTGGCACGCCTCAGAGACCGGCAGCATCCAACACTATTGTGGTAGGAAGCCCACACACTCCCAACACGCATTTTGTGTCACAGAACCAGACGTCTGACTCCTCACCTTGGTCTGCTGG
Seq A exon
GCACAG
Seq C2 exon
GAAGCGGAACAGGAAGGGCGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAGGAAAGGAACCACCTCCTACAATGAGGTGGCTGACGAGCTGGTGGCAGAGTTCAGCGCTGCCGACAACCACATTCTACCAAACGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038482-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=1.000 C2=0.291
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=PD(18.4=34.1),PF063127=Neurexophilin=PD(40.6=95.1)
A:
NO
C2:
PF0231915=E2F_TDP=PU(56.6=83.9)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTCCCAACACGCATTT
R:
CTTGCCATTCTTCTCGCCCTT
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: