MmuEX0047054 @ mm10
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96202131-96202773:+
Coord C1 exon
chr9:96202131-96202188
Coord A exon
chr9:96202322-96202395
Coord C2 exon
chr9:96202673-96202773
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTCCCATCATCCAGGAC
3' ss Score
8.75
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTTTCTGTTAAAATAAGCATTCTGACAAACTGCTGAAGAGAGAGCCCTGATAGACTAG
Seq A exon
GACATTGAAGTATGAGTCATGTCAGCCCGGGCCACATAGGAATTTTGAGGTTAAAAGTTAGACTGGGTGACATG
Seq C2 exon
CCCCGAGGCTGCCTTCCTGGTGCTGGGAGTGTGTGCGCCTGGCCCTTCCCTGTGGGTCTGAGGATCTGAATGCAGACCCCCATGTTTACATGGTAAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411-'1-3,'1-2,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATTCTGACAAACTGCTGA
R:
ATGTAAACATGGGGGTCTGCA
Band lengths:
135-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types