MmuEX0047058 @ mm9
Exon Skipping
Gene
ENSMUSG00000032411 | Tfdp2
Description
transcription factor Dp 2 [Source:MGI Symbol;Acc:MGI:107167]
Coordinates
chr9:96096723-96123617:+
Coord C1 exon
chr9:96096723-96096979
Coord A exon
chr9:96102550-96102607
Coord C2 exon
chr9:96123513-96123617
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCCACTTTATTCTAGGTT
3' ss Score
10.59
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCGGCCGTGTCGCTGAGGGCGGACGGCGTCGGGCGCGCTGGGCTGTGCGGCCGTCGCTGCCTGGCACGCGGGGCGCGCCTTGACCCTTCCTGCACTGCAGGCTTCCGACGCGCGCGAAGACCGCGGCTGCGCGGCCGGGAGCTTGCTCCGAGCGGACCTGGCTCTGCCTGAGGAGCGGCGGCTCGCGAAGAAGCGTCTCCCCGGGAGTGGGCCGAGGGCTGTGTGGACCGGCGGCGGCCCCTCTGCACCAAGCTGCG
Seq A exon
GTTTCTGTTAAAATAAGCATTCTGACAAACTGCTGAAGAGAGAGCCCTGATAGACTAG
Seq C2 exon
GATATTTTAAAGAACTGTTGAAGACGAAGGTTTTTATTTTTGTGTGTTTTTTAATGGCTTTACAGAATATTAAACAGAATACTGTTTGACATGACGGCAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032411_MULTIEX1-1/7=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCTGTGTGGACCGG
R:
TTTGCCGTCATGTCAAACAGT
Band lengths:
145-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: