MmuEX0047325 @ mm9
Exon Skipping
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3326573-3412750:+
Coord C1 exon
chr17:3326573-3326726
Coord A exon
chr17:3362133-3362373
Coord C2 exon
chr17:3412632-3412750
Length
241 bp
Sequences
Splice sites
3' ss Seq
GTCCCCTTCCATCCTACTAGGTT
3' ss Score
9.65
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CGGAGCTAGAGAAGCCTTGACCTTCCCGGCTCAGCGAGTGGAGAACAAAGTGACGGAGAAAACTTCGCGGAGTGTGCCCTGAGTCCCCACGGGGCCTCGCTCAGGGGCGCAGAGCCGGGCTCGACCGGTCCTCTGTGTTGAAACTTGGACCGAG
Seq A exon
GTTCTGGTACACCCACAGAAGAAAAACAACAAGAGAATCGATGGAGCTACAAGGAAAAATGTGGCCCTGACAGTGTGAGCTAGCGTGTCCCAGGATAAAGTACTCAGCAAGAAGCCCCCATGGCAGCATGTTGGCGAGGCTGAGAAAGCAGGGATGGGAAAGAGGATTTGGAAAGAGAGCTGTGTGTTTGAGAAGAGGTAGCATTGTGAGACCCCCTACTTAAAGCGTTTCTCCCTGGAAG
Seq C2 exon
GATCACTTCATGGATTTGCCTCACGTACCTATGTTTGTTAATTTCCTGTGTCGTTCCCAAGATCACGTAAAACCCTCTGAGCATTATTGACCTCCCTCCCAGCAAAAGCCAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGAAGCCTTGACCTTCC
R:
CTGCAGCCTGGCTTTTGCT
Band lengths:
269-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: