MmuEX0047463 @ mm9
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105037355-105045608:+
Coord C1 exon
chr11:105037355-105037455
Coord A exon
chr11:105041802-105041900
Coord C2 exon
chr11:105045526-105045608
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGATTCCCTTGTAGTCC
3' ss Score
7.31
5' ss Seq
TAGGTGAAG
5' ss Score
3.29
Exon sequences
Seq C1 exon
GAACTCTCAGCTTCTCTTGCACCGTGCCTGCCTGGATCACCATGCCTGCCTGGATGCTGCCATGTTCCCCCTTGATGATACTGGATTGAACCTCTGAACTT
Seq A exon
TCCTTCAGACACGTTCAGACATCTGGTCAAGGAAGCATCAGAAGAAAACAAAAAGCTGAGTCGTTACTTTGAAGTCCGTGTCTTGGCTCGTGAAACTAG
Seq C2 exon
AAATGATGGAAGAACTGCATAGCCTGGACCCACGAAGGCAGGAATTACTAGAGGCCAGGTTCACTGGAGTTGGTGTAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-'0-10,'0-0,2-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.996
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGCTTCTCTTGCACCG
R:
ACACCAACTCCAGTGAACCTG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: