MmuEX0048663 @ mm9
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23413274-23416366:+
Coord C1 exon
chr8:23413274-23413330
Coord A exon
chr8:23414441-23414485
Coord C2 exon
chr8:23416310-23416366
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGCAATTTTAATTCTCTAGCTA
3' ss Score
5.14
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AAATAAAAAGGTGTCAGTGAGTGCTTCAAGGACCATTAAACTAAATGGCAGCACTGG
Seq A exon
CTACGACACAAATGAACAGATAACACTAATCACTAACGGGAGCAG
Seq C2 exon
TTTGTCATATCCAGATGAAATAAAATCAGCAAGTTATGCGGACCCCATCAGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'5-5,'5-4,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.094 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTGTCAGTGAGTGCTTCA
R:
TTTGTACTGATGGGGTCCGCA
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: