MmuEX0050186 @ mm9
Exon Skipping
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q (putative) 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:54997890-55010876:+
Coord C1 exon
chr9:54997890-54998208
Coord A exon
chr9:55008596-55008702
Coord C2 exon
chr9:55010775-55010876
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTGTACCATCTCTGTGCAGCAG
3' ss Score
8.02
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCGCAGCCGGCCTGCTCTGGGGACCGCGGCTCGTCCGTGGGCTCCTGTCAGTCGCTCAGGTGGAAAGGCTCTCAAGTATCTGTTTTAGCTACTCGTTTTCCCATCGGGTTCCAAAACCCACGTCCTTGCTTGTTCAACCAGTTCTCGTTTGTGTTTTGGTCTCCGAGGACAAACGAACACTGAAAGCCTACGTATTTAAGGAAAAAGTTTAGGACGCAACCCCGGGGGATGGTGTGGAACCATCGTTTAGCCCTGACCTGGCTTTGCGCTTACGTGTTTTGGAAAAGCTCATGGAACCTTCCACGCGGCAGGTGGTGTG
Seq A exon
CAGCCTACAGAAGCCAGAGGTTGTTGGATTTCCTGGAACTGGAGTTAGAGCTGGTGGTGAGCTGCCATGTGGTTGCTGGGAACTGGCCCTGCTCCTCTACAAGAGCA
Seq C2 exon
GAATCTTACCCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCAGTTCTGGAACGCTTAGAAGATACTAAGAACAACAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-'1-4,'1-3,3-4
Average complexity
C1
Mappability confidence:
86%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.382
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0577317=RWD=FE(28.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCACGTCCTTGCTTGTT
R:
GGGTCATCAGAGTCCACAAACC
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: