MmuEX0050709 @ mm9
Exon Skipping
Gene
ENSMUSG00000020407 | Upp1
Description
uridine phosphorylase 1 [Source:MGI Symbol;Acc:MGI:1097668]
Coordinates
chr11:9019377-9025701:+
Coord C1 exon
chr11:9019377-9019452
Coord A exon
chr11:9019896-9020003
Coord C2 exon
chr11:9025636-9025701
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCCTTCTTCAGAGG
3' ss Score
9.98
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCTTGACGAAGTGATTGACTGGTGGTCTCTGACACTCTGGAAGCCTTCTCGCGACGTGGACATCGGTCTCTGACA
Seq A exon
AGGCCAAGCAGACCTTCTGGTCTCCGTAGAACCCTCATTACCGCACGTATCTTTAATGCGCTTCTTGGGCACAAATTGTAATCTCAGTCTTCTATACTTTCAGCTCTG
Seq C2 exon
GTCCTCCTACAGTGAGAACATGGCAGCTACAGGAACTGAAGCAAAGGACCTTGAAAACCATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020407-'7-9,'7-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGTGATTGACTGGTGGT
R:
TGGTTTTCAAGGTCCTTTGCT
Band lengths:
130-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: