MmuEX0050710 @ mm9
Exon Skipping
Gene
ENSMUSG00000020407 | Upp1
Description
uridine phosphorylase 1 [Source:MGI Symbol;Acc:MGI:1097668]
Coordinates
chr11:9018106-9019452:+
Coord C1 exon
chr11:9018106-9018165
Coord A exon
chr11:9018634-9018663
Coord C2 exon
chr11:9019377-9019452
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCGCTGCTTCTCTCTCACAGTGC
3' ss Score
9.91
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ACAGTTTACAACAGCCTAGCTCTGCATTCTTGACCACGTCCACACGGCCATTCATCTCTG
Seq A exon
TGCTCCAGCGCGGCCAACGGGGACTGAGCG
Seq C2 exon
GTCTTGACGAAGTGATTGACTGGTGGTCTCTGACACTCTGGAAGCCTTCTCGCGACGTGGACATCGGTCTCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020407_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCATTCTTGACCACG
R:
TCAGAGACCGATGTCCACGTC
Band lengths:
117-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: