MmuEX0051096 @ mm10
Exon Skipping
Gene
ENSMUSG00000039046 | Usp6nl
Description
USP6 N-terminal like [Source:MGI Symbol;Acc:MGI:2138893]
Coordinates
chr2:6408929-6415040:+
Coord C1 exon
chr2:6408929-6409009
Coord A exon
chr2:6409996-6410148
Coord C2 exon
chr2:6414933-6415040
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCTGTCAGTGCAGAAA
3' ss Score
4.22
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CAAAAGCAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAAAAATGGGAGAGATACAAGAACACCGAGAAG
Seq A exon
AAATCACAGTGAAATGAAAGGCGACATGTGTCCATCCTTGGAAAATGGTTTTGGCCTTATGCTTGCAAACCACTGACATCTCACCTTCACATGAGTGATCTTCACAGACGTAATAAAGGTGGCTCTGCATCTAGCTCCTCCATGTGTACACAG
Seq C2 exon
TTTCATCGACGAATTTACAAAGGAATTCCACTCCAGCTCCGAGGTGAAGTCTGGGCTCTTCTTCTTGAGATCCCTAAAATGAAAGAAGAAACAAGAGACCTTTATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039046_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(11.9=69.4)
Main Inclusion Isoform:
ENSMUST00000114937fB4465
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGCAACTGGAAATCGAAAGGA
R:
ATAAAGGTCTCTTGTTTCTTCTTTCA
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types