MmuEX0052618 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137412585-137415148:-
Coord C1 exon
chr5:137415007-137415148
Coord A exon
chr5:137413360-137413501
Coord C2 exon
chr5:137412585-137412793
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCATGGCATCTGCAGGCA
3' ss Score
6.79
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GAAGGCAAGACCTGGATCACCAGCGGCTGTACTCAGAGCTGTAACTGCACAGGAGGGGCCATCCAGTGCCAGAATTTTCAGTGTCCCTTGAAGACTTACTGCAAGGACCTCAAGGATGGCAGCAGTAACTGCACCAATATCC
Seq A exon
GCAGACAAGACGTGGATCTCCAGGGGCTGCACCCAGTCCTGTACCTGCTCAGCAGGAGCCATCCACTGCAGAAATTTCAAGTGTCCCTCCGGGACCTACTGCAAGAATGGGGATAATGGCAGCTCTAACTGCACCGAAATCA
Seq C2 exon
CTCTACAATGCCCAACCAACAGCCAATTCACAGACTGCCTTCCCTCCTGTGTGCCTTCTTGTTCCAACCGCTGTGAGGTCACCAGCCCAAGCGTCCCCTCCAGCTGCAGGGAGGGATGTCTTTGCAACCATGGCTTTGTGTTCAGTGAGGACAAATGTGTGCCCAGAACACAGTGCGGCTGTAAAGATGCCCGGGGTGCCATCATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.6=91.7)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.9=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCCAGTGCCAGAATTT
R:
TGGGCACACATTTGTCCTCAC
Band lengths:
251-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types