MmuEX0052671 @ mm9
Exon Skipping
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:162938925-162950537:-
Coord C1 exon
chr1:162949615-162950537
Coord A exon
chr1:162943016-162943152
Coord C2 exon
chr1:162938925-162939622
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTTTTTCTCTCCAGGTA
3' ss Score
12.89
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAAGAAATAGTTGCTCCTGGAGAATCTGCCCAGGGCTCAGTTTCTACTACTGGGCCAGATTGAAACATTGAGGGGGAGGGGGCAAACCCTCTTCCCCTTTGGGCCGTAACCAGCCCCTGTCAGGACCATGGATTGGTACTTAGATTCACAAAATGCCACGTCACTCAACTAGAAGATGTTCCCATGGTTTTGCCAAATTAGAAGACCAACATGCGGAAGGCACTAAAGGCTCTTCTCCTCGTTCCCACCTCATACTCTGGAAAATAAGCAAGCAAATCAGCTTCTAATTCAGGGATCAACAGCCTTGGTTTGTTAACTTTATAACAAAAAAGATGTTTTTAAACAAACTGATCAATGACTCATTTATCAACCAGTCATGATTGAACACCATACTTAGGTCCATATCATCTTGATGGGTGAAATCCCAGATCTAAAAAACAGCAGCAGGAGCTTTGGCCAAGTGAAGCAGCCTGCCAGAAGAGAGGAAGGTAGTCACAATG
Seq A exon
GTAGCCCTGGCTGTCCTAGAACTCACTACATATACCAAGCTGGAACTCATAGACTTCTGCCTGCCTTTGCCTCCTGAGTGTTGGGATTAAAGGCAAGCTCTACCATGCGCAACAGGGCTTCCCATTTTGAGAGTCAA
Seq C2 exon
CGACACAGTCACACCAGCTGGAGTACGTAGCCACTACCTGAGGGTTAGAGTTCTGCCTGTAGCCTCATCTTGAAGCAGATGCTGATGACATTTGAGAATGACGTGTTTTCTATAAGTCATAGAAGCCCAACTGTAGTGGTTAAGAACCACTCAAAGCAGAGATGCTATGCAGGGAACAAAGCTTAAATGTGTTTCCTCTGGAAGCCACATTACTAAAGAGGTCACAAAAAGTGTACCAAAAGTCCACCTCTGAAATGCAGGTGGCAGGCATATTTAGCATTTATACGGAGTTTCTAGTATTTTTACAAAAATGACTTTAGATCTGGTAATGAGTTTTGTTGTTGTTCTTTAATGAGCCTGTTTTCTTTTTGGAAAAATGGCTCAATAAAAATATCACTAAAGAATTCAATTGTATATGCATGTGCATTAAACACAGAATGGTATACTGAAGATAGTTCACACAAATAATTTTATGGGAAGTTTAGCTATTTTCTTAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467-'5-9,'5-7,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.4)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGATCAACAGCCTTGGT
R:
AGTGGCTACGTACTCCAGCTG
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: