MmuEX0053010 @ mm10
Exon Skipping
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111651619-111658441:+
Coord C1 exon
chr8:111651619-111651719
Coord A exon
chr8:111653359-111653415
Coord C2 exon
chr8:111658386-111658441
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTGGTTTTTGTCAGGAT
3' ss Score
7.73
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CCAAACTGGACACCATGCAGGACAGTGGGCAAGGGCGTACACAGCTCTCAACTGGGAAAACACATTGTCCTGGGTCTTTTGTAGGACATGGACAGACTAGA
Seq A exon
GATGACCTGTCCTTTGGTGAAAATGGGGTATTGAAGCCTTCCACTGAGTGTGTGACG
Seq C2 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835-'3-2,'3-1,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.120
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PU(3.2=20.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCATGCAGGACAGTGG
R:
TTTTCTGGGTTGGGGTGAAGG
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types