MmuEX0053013 @ mm10
Exon Skipping
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111666061-111671008:+
Coord C1 exon
chr8:111666061-111666204
Coord A exon
chr8:111667732-111667838
Coord C2 exon
chr8:111669491-111671008
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTTTTGGAGACAGAGT
3' ss Score
0.55
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GAACTGTGTCATTTCAGGGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
Seq A exon
AGTCTGGCTGTGTATCCCTGACTGGCCTGGATTCACTGTGTAGACCGTGCTAGCCTCAAACTTGTAGAGATCCATGTGCCTGGATTAAAGTTGTGCTGAGATTACAG
Seq C2 exon
AAGTGTGGAAGGCTGATGGCCAGGTGGAGAGGGACCCCAGAGACCTGCAGAGGCAGGTGGGGTCACTTACAACCATCAAGAACCAACCACCAACTGAAGAAAGAGGCAGTCGTTTTGGAAAGACATTAACTCTGAACACAGACTTTGTTTCATTAAGACAAGTTCCCTATAAATATGATTTATATGAAAAAACTTTGAAGTACAATTCAGACTTACTTAGCAGTAGAAACTGTGTAAGAAAGAAAGGAGACGGGTGTGGTGGATTTGGGGAACCACTTCTGTACCTGAAGCAAGAGAAACCCCACGCTGGACTGGAATACTCAGAATATAATGGAAACGGAAGGGCTCTCAGCCATAAGGATGCCATCTTTAAACATCGGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAACTACTGTGACAAGACCTTCTCCTTCAAGTCGCTGCTCGTTAGCCACAAGCGGATCCACACGGGCGAGAAGCCCTATGAGTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCATTTCAGGGATCCGT
R:
GCCTCTTTCTTCAGTTGGTGGT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types