MmuEX0053035 @ mm9
Exon Skipping
Gene
ENSMUSG00000053985 | Zfp14
Description
zinc finger protein 14 [Source:MGI Symbol;Acc:MGI:99160]
Coordinates
chr7:30829739-30837246:-
Coord C1 exon
chr7:30836364-30837246
Coord A exon
chr7:30830758-30830858
Coord C2 exon
chr7:30829739-30829827
Length
101 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTTCCTCTTTCTAGTGC
3' ss Score
10.01
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAAAACCTAAGGCCAATACCAACGACTAGACCAATATACACAACGGCTAGAAGGGACAGTGGGAGAAAGCAGAGGCAGCGGGAACTCCAAGGAGCCTGAGCAACCTTTCCCTGGGTAGATGTGGGACTGCACCTTTGGAGAATGTATTTTACTGAGTTCCCTGATCATGCCTACACCCTCGCTGGGGTGAGAATATGCTTATCTCACATATTAAGCATGTGATAATGTGATGATGGTGTTCTCAGCCCTGGTAGGGCAACGACACAACCCCCAGCCCAGTGAGCTAGGTTTGGGGTGGGGATTTGGGGGCAGAGGGCAGCGGAATCTCCTAGCCCTTCCAGCTGGTCCAAGATCACACCCAGAGGCCTCCACCCATCACAGCCCCGAGCACGCTTGCGCACTCCGCTGCGTTGGCCCAGTCTTTCCCACCATGGACTACATTTCCCACAGGCCTCTGCGCAGCATCCTTCCGGCTGCTTAGCGCCGGTCCGCTCTGAGAG
Seq A exon
TGCTGGGGTTCGAACTCAGGCCTTTATGTGTTGAGGCCAGCCCTCTCCCTCTGAGCCTTGTCTCCAGGAGTCTTCTGCTTTGGAGCCTCACGAGGAGAGAG
Seq C2 exon
CGTTGCTTGTTGACCCCCAGTTTATCACAAAGAAATACTGAAAAGAGCCGACCGGTTCCTGCAGTTCTAACACTATGGCCCTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053985_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGTCCAAGATCACACC
R:
TGAGCCAGGGCCATAGTGTTA
Band lengths:
250-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: