MmuEX0053080 @ mm9
Exon Skipping
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50719588-50725903:-
Coord C1 exon
chr11:50725782-50725903
Coord A exon
chr11:50724208-50724378
Coord C2 exon
chr11:50719588-50719659
Length
171 bp
Sequences
Splice sites
3' ss Seq
GGAGAATTTTGTATTTTCAGGAG
3' ss Score
3.72
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GAGTCTCTCATGTCTTCCTTGCCGTCCCTCAGCTCCGCCCCTAGAGACTGCACATTTTCTAAGAAGGCCCCCCAGGAAGGAGGAAGGCAATGGCTGTTAGGCCTCTGCCATTGGCAGCTCAG
Seq A exon
GAGTTACTGACATACAAAGATGTGTCTGAGGACTTCACTTGGGAGGAGTCAATGCAGCTATATTCTGCACAGAGGAACCTGAATGGCAGAGTGATGCTGGAGAACTGTAGCACCCTGGTCTCCCTGGGTGAGCACCCCCGCCTTCAGCCATCTGCCATATGGAATACACAG
Seq C2 exon
GCCTGGCTCGTTGTCTGTGAGCATCCTGTGCTCCCAAGAGGATCTCCTAGACTGGGTTTTAAAACTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321_MULTIEX1-2/5=1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTCTTCCTTGCCGTCC
R:
ACAAAGTTTTAAAACCCAGTCTAGGA
Band lengths:
186-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: