MmuEX0053116 @ mm9
Exon Skipping
Gene
ENSMUSG00000042097 | Zfp239
Description
zinc finger protein 239 [Source:MGI Symbol;Acc:MGI:1306812]
Coordinates
chr6:117813095-117817057:+
Coord C1 exon
chr6:117813095-117813160
Coord A exon
chr6:117816413-117816592
Coord C2 exon
chr6:117816839-117817057
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCATAAAACCACAGGTA
3' ss Score
6.63
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTAGTTCGAATCCTCGATGATGCTCGGGAGTCCTGCGTTACCAGGTGTGGGTTCTACCTACAAGAG
Seq A exon
GTAGAAAGTCCCTCAAGGTTGACGTCCGGGTGGTGGATGGATCGTTCCTGCTCTGATGCTGGCATTTCATGCCACTGCAGAACTGTGATGACTAAGGAAGAACTGTGACTAAGCTGCAGAGAAGGGCTGCAGCGGCAGAAGTGAACCTTGTATTTTCTAGATCCAGGCCGTTCTTCATAA
Seq C2 exon
GTAGCTGGAAATACAGGTCCACACCACCACACCTCGTTTGGGCTGGATTTAAAGAAGAAGGGGTGTTTCTTAACATCTCCAGCAGCAACGCTCTGGTCTTTTTTATTTGGCAAATCCAGTCCTCCCACAGAGAAAGAAACTCTTCACCCAAAGGATGGTGAGCTCCCTCAAGGCACTGAGGGATTGGAAAATAATAAGGACTTCACGAAGACGAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042097-'1-5,'1-4,3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTCGATGATGCTCGGGA
R:
TCCAATCCCTCAGTGCCTTGA
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: