MmuEX0053164 @ mm9
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45944850-45947681:-
Coord C1 exon
chrX:45947541-45947681
Coord A exon
chrX:45946691-45946775
Coord C2 exon
chrX:45944850-45944938
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCAAGTTTGAATTCTTTTAGGAA
3' ss Score
6.1
5' ss Seq
TCAGCTAAG
5' ss Score
-22.79
Exon sequences
Seq C1 exon
CGTTTCCTTGCTCCTCCCTTCTCGCTCTGCCTCCACCCCTTCTCCTCGCCCCTCTTTTCCCCTCCTCCTGTCCTTCCTTCTTCTCTTCCTCCCGCTGCTCCTCCTTCTCCTCTGAGCTCCGGACGTCCTGCAGCGGTCTGG
Seq A exon
GAAGAAGTCTCAATGTGAAGTGAAGCAGTTTCTCCCAGATGTGGAAGATCTTTATCCAAGGACCTCTCTTTGTTTGAGAGGATCA
Seq C2 exon
GGAGGACTTTGTCTTTCTGGAGCCAGGAAGGTGATGTAATTGCTACCACCAAACCTGAGAACTTGAGCTCAATCGCAAGGACCCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCTTGCTCCTCCCTTC
R:
TCACCTTCCTGGCTCCAGAAA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: