Special

MmuEX0053175 @ mm9

Exon Skipping

Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72176835-72178980:+
Coord C1 exon
chr9:72176835-72176969
Coord A exon
chr9:72177317-72177417
Coord C2 exon
chr9:72178673-72178980
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATTTATCTCTGTACCTCCAGCTT
3' ss Score
7.29
5' ss Seq
ATTGTGAGC
5' ss Score
3.78
Exon sequences
Seq C1 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAGTTTTTGACATGCAAGGAAAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTGGAAGGACTTCCCCCTGGAACAAAA
Seq A exon
CTTTTTTAGAGTGCCTAATGCTACAGGTTGCCAGATGTTTCTTGAAGTTGTTATTGCTGAGTCTACTCTCAACGAAGCAAATATTGCTGCTGGACAGCATT
Seq C2 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAGTCAGGATCTTCAGTTACACCTTCTATCAGCCCAAGCACTTCTACCCTCCAGCTCTCACCTCCAGAGCCTGACAATGTAACTGCTAAAAATCACGTGAAGTTGACTACAAGTACACCAAACACAACCATATCTGACCCCAGTAAAGCTAATGAGACCAAGTCTAATGGCAGTAAATCTAAAAACAAGTCAAAAGTCTCCAACATGCAGAAGAAACAAAGCACATTGTCTAGTAGTAATAAAAAAAGCAAAGTAAACACAGCACTAAGGAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-17/27=16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.403 A=0.000 C2=0.971
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000096175f3843A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000096175





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000043919, ENSMUSP00000055943, ENSMUSP00000096175f3845A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr15:56960547-56960648 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr10:53792092-53792194 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AAGGGAATACATCGTTGCACCA

				
R: 
ACATTGTCAGGCTCTGGAGGT

				
Band lengths: 
242-343

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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