MmuEX0053212 @ mm9
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19433541-19445698:+
Coord C1 exon
chr9:19433541-19433650
Coord A exon
chr9:19436778-19436832
Coord C2 exon
chr9:19445510-19445698
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTCAATTCTTTCCTCCATAGCCC
3' ss Score
9.61
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ACAAGATTGGGATCCAGTTACCAGTTATCCTTGTTGAGGAACCAAATCAGAGTTTCTACGAAGTTGCCTATGGCTGCTGGAGACAGGGGATCCTGTTAGAGAGTAAGGAG
Seq A exon
CCCCTGGCAAAAGCATTCTGCTTTTTGCCTTCATGAATGACTTCTTGGACCTCAT
Seq C2 exon
GTTGATAACCTGTCTGATTATGAGTCAAGAGGAAATGTCAAGAAACAAAATTCAGTGTTCTCCTCACTAAGTAAAAGACATAGCCTTTGAAGAATACCTTGTGGCAATTGTCCACGTAGGAATGCAGTGCTTCTTCAGGTACTCCCAGTGCCCCACAGATGGCTACCATCAGTCTATCTCCCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGATCCTGTTAGAGAGTAAGG
R:
CCTACGTGGACAATTGCCACA
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: