MmuEX0053287 @ mm9
Exon Skipping
Gene
ENSMUSG00000042063 | Zfp386
Description
zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
Coordinates
chr12:117285935-117293421:+
Coord C1 exon
chr12:117285935-117286077
Coord A exon
chr12:117286270-117286434
Coord C2 exon
chr12:117293190-117293421
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACCAGGCCTTTGCCTTGCAGCGG
3' ss Score
8.19
5' ss Seq
TAGGTCAGA
5' ss Score
4.42
Exon sequences
Seq C1 exon
ACAGAGCCTTGACAATATCGCGAGTCCACATCCCGTACGCGACCTTTGTGTTGGAAAATGTGAGCGTGTTTTCCAGCTTTTGGAAGCCCCGGTGGCCCTTACGAAATCACGGGTGCTGGAGATGCAGGAGAGCCATGGAGATG
Seq A exon
CGGCCTCTGTGTCTGCAGCCAGCAGACTGCGGGAGATGGCCTGAAGGAGCATCAGATAATCCAGTCTCCGTGGCGGAGGTTCCTGCGGGACAGCAGCGGGGCTCCCGCTCGCCTCCCAGAGTTTTCCCGTTTCCCCCTTGCGCCTGGTGGATGTACCAGAAATAG
Seq C2 exon
GAGCAGTTGACCTTCCGCGACGTGGCCGTTGACTTCTCTCCGGATGAGTGGGAATGCCTGGACCCTCCTCAGCAGAGGCTGTATAGGGATGTGATGGTAGAGAACTACAGAAACCTGGTCTCTGTGGGTGAGGACAGCATCCCTGCAGAGCTCCCAACGCACTGCCACCATTTCATGCCTTTCCTTTCAAAAATGTCTGCCATAGCCTGTGCTTTTCATAAGCAGTACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042063-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.463 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=52.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACGAAATCACGGGTGCTGG
R:
GCACAGGCTATGGCAGACATT
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: