MmuEX0053288 @ mm9
Exon Skipping
Gene
ENSMUSG00000037001 | Zfp39
Description
zinc finger protein 39 [Source:MGI Symbol;Acc:MGI:99183]
Coordinates
chr11:58697675-58704846:-
Coord C1 exon
chr11:58704679-58704846
Coord A exon
chr11:58703216-58703411
Coord C2 exon
chr11:58697675-58697693
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTTTTCACCAGAAGTCATACCTT
3' ss Score
-18.13
5' ss Seq
CTCCTATAA
5' ss Score
-19.72
Exon sequences
Seq C1 exon
TGTGTGGCAGAGTGTCCTTCCCCCTAACAAGCCCGATGACACGAGGATTGGAGAGGAACTTGATGCCTCTCTAACTAGTGAGCCCCCCATACACGCAGAGCATCCTGGGTTGTATAGCAGAGCTCCAGGCACTGGACAGCAGTTTCAGTGTTGTATGCAAGAAGTGAC
Seq A exon
CTTAACCGGCATCAGGTAACTCACGGAAGTGAGAAACGATTTGAATGTCAAGAATGTAGGAAAACGTTTTATCACAAGTCTTCCCTCACTGTACATCAGAGAATCCACCTGAGGGAGCTCCTGTGCGTCTGATGTGGGAAGCTCTGTCAGCAGGAACCATCAGCTGGCACCAGACAAGGCATGTGGAGGGCGTCTC
Seq C2 exon
CCATTGCAGGGTCTGTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037001_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: