MmuEX0053328 @ mm9
Exon Skipping
Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20290774-20297190:-
Coord C1 exon
chr9:20296830-20297190
Coord A exon
chr9:20295125-20295926
Coord C2 exon
chr9:20290774-20290881
Length
802 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTCTTTTTTTAGATT
3' ss Score
12.55
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TCTTCCGGCTCTTATCTGCACTGAAGAGTTGCGGAGTTGCCTGGCATTCGTGAGTTCTGCGGTACAAGGACTACCTGGAGGCGGAGGGGGAGATAGAGAACGAGAGTGCAGAGCTCTGCTCCGCTTGCCACGGCGCCTCCGGGCGCGGCCAAGCCTGAGTCCTCTCTGGCTGTCAGTCGCCAGGCTGGGGAAGTGCCCAGAGGGCGGGCCTGGCGATGGCTGCGGCTACGATGCTGCTCTTCAAAAGCCGCCCAAGCAAATTCTGTGCGAAAGGCTCTTTTATTTTTCTCCTCAGAAATGAAATTTTGCCGGAGTAGTTGGAGTGATCAGCGCCATACACCTTGCGATTTCAGCGCCTCTG
Seq A exon
ATTTATTTATTTTATATATGTGACCACACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTGTAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATATGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAGAACATGATTTCTATGCCAGGATAGTTACATAGTTTCAGGCCAGTCCAGTCTGCATAGTTATACCCCTATCTCCGAATAAACAATAATAGATACAACACTTGACTGTTAAATACTTGGTAATGTACCACCTAGATTAGGACATTGTCTTACTGAAAGCAAAATATTATTAGATTCAATCAAGAAAATTAAAGAATAGAGTTATTTGGGTATTCAGCTCAGTTGATAGAGTGTTTGTGTGTTATCCACAGACCCCTAGGTTCAGTTCCTAGTACCACATAAACTGAGTGCAGTAGCTCACTTGATTTTGATCCCAGCTCTCTGCGGATAGAAGCTGGAGCATTAGGAGTTCAGGGTCAGCCTCGGTCACATAGTAGGTTGTAGGCCAGCCTGAACCACATGATCTTGTCTTTACAAAAGAAAAGAAGGAAATCAAGAACTGGCTGAGGATATAGCTCAGGAATAGAATACTTGCCTACCATGTATGAAGCCCCAGTTCAATTCCCAGCACCACAAAAATACATACATACATACATACATAAAATGATGCATGTGATATCTGATCTATAAACATTCAGAATTCTCCACATTGTTTTAAAAAGCGGCAACAAGCTTCTGGATGTTTGGAG
Seq C2 exon
TCTTGTTTTCAGACTGGACTCAGGCTGGCCTTGAACTCCCAGTGTAGCTGAGGATGACCTTTCGCTCATGGACTTCCTGTTTCCACTTCCTAAGTGCTGGGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475-'2-3,'2-1,4-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCGTGAGTTCTGCGGTA
R:
CCAGCCTGAGTCCAGTCTGAA
Band lengths:
346-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: