MmuEX0053366 @ mm9
Exon Skipping
Gene
ENSMUSG00000078995 | Zfp456
Description
zinc finger protein 456 [Source:MGI Symbol;Acc:MGI:3040694]
Coordinates
chr13:67473687-67476746:-
Coord C1 exon
chr13:67476626-67476746
Coord A exon
chr13:67475055-67475183
Coord C2 exon
chr13:67473687-67473813
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAACGGTATCCTGTTTACAGGTC
3' ss Score
8.15
5' ss Seq
ATTGTGAGC
5' ss Score
3.78
Exon sequences
Seq C1 exon
GTGACCACTGGGAGCCTTCTAGGAAATACCCTTCTGACTTCAAGTCTGTACTTGTGCCTCTTCCTCAAAGTTGGGCGGAAATGATATTCGGCTATCTATTCCAGTTGTCTCTGACAAGAAG
Seq A exon
GTCCCCGGACCTCCACCCCCAGGGTCTCACAGGAGATTGTACTCAAGACAGCAGACACTTGCCCATGCAGAATGGAGGAAGCCAGTGCTGGCCAACATAGGGAGTGAGCCCCGCAGTTAATTCTCCATT
Seq C2 exon
GAAATGTTGTCCTTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGATTGCCTGGAGCCTGCTCAGTGGGATCTGTACAGGAATGTGATGCTGGAGAATTTCAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078995_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGGGAGCCTTCTAGGAA
R:
CAGGAACACAAGGTGGCTGAA
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: