MmuEX0053383 @ mm10
Exon Skipping
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:35793523-35799908:-
Coord C1 exon
chr7:35799808-35799908
Coord A exon
chr7:35799174-35799483
Coord C2 exon
chr7:35793523-35795618
Length
310 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGGTTTCTTTAACAGTTC
3' ss Score
10.41
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
Exon sequences
Seq C1 exon
GCAGCATCAGGAGAACAGAAGTGCCAAAGCCAGAAATAGATTTGTAGAGAGCAGCCATCCAGGAAGAACTGACCTGTTAAGAAGCAACCAATCCGGGGCTG
Seq A exon
TTCGGTTACATCGAGTGATGTTTTTCTGGACGCTGTCTTGTGAGAGGGCATGTGACGTTTTACTGAACATAAACACTTGAGCGGACTCATGATATTTAGGAAGAATATAAATAGAGCCCCACAAACACTGAGAAAACGCGCTTGCATTGCAGTACCACGTACTTCTTTGCTGGTGTTCACTTTGTAGAGAGAAACACACCAAAGAACTTCTCATGGTATTCCGGCTGATTCTGGCCGCTTCTGCTAACTGGTGCCAATTTGGCTGAGCCTTGCTGTTTCTGCTGGATTGTGCCACTACTGCTGATTCATG
Seq C2 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACCGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGTTGACCAACAAAGAAAAGCTAAAGCAGATCCATTGGTCCACGTTATCCAGAAGCTAAGCAAGATAGTGGGGCATGAGAAGTCACAAAAATGTCTACTGATTGGGAAAAAGCGCCCACGTCCAAGTGAGACAGCAAACTCTCTTGAAAAGCTAGAGAACTGTGAGATTCCAGCTAAAGCCACTGAGTCCCCTGCTGCTGGGGTTAGGAAAACCGAGATGTCACAGGCAAGTTCCACTCTTGCTTCAAATGATGGGAAGGCTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCACCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCATGGGCAGCAGCATGACGTGATGCTCATGTGCTCGGAGTGCCACGCCACCTCCAGGAGCCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452-'7-5,'7-4,8-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.457
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=14.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000205670fB19924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGAGCAGCCATCCAGGA
R:
GGACTCAGTGGCTTTAGCTGG
Band lengths:
345-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types