MmuEX0053465 @ mm9
Exon Skipping
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37139470-37141848:+
Coord C1 exon
chr17:37139470-37139722
Coord A exon
chr17:37140231-37140260
Coord C2 exon
chr17:37141742-37141848
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTAGTCTCTTGCCTTCTCAGGGC
3' ss Score
9.78
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AAATTTCTGACCTTGGCAGACAGCCACTTGAGATGTGTTACCTGCGGACGGAGCAGAACGGAAGCAGAGGGACAAAGTAGCGGATTCCTGACTTCTGGCAAGGGCCCCTTCCTGGGTTTCACGCCGCTGCGTTCTGGTCGAGGCTGGAACGCGCGCCCAGCCCTTTGTGTGGCTGTGGTCCGAGGCTACGGCTCAGAAGCCGAGCGCTGGGAACGGCAGGACTGCCGAGCCTCAAGTAGGGCTGTCGAGCGCG
Seq A exon
GGCTCCTGCACCAGGAAAGAACAATCAGAG
Seq C2 exon
ATTTCTAGAAGTGGGCACCAACAAATTGTGGCTAGAAGCAGTCTGGAATAGAAGTCAAACGCCTAGGACCAGCCTGGCATTACCAAACAATGGCAGCTAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGTGTGGCTGTGGTCC
R:
CCACAATTTGTTGGTGCCCAC
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: