MmuEX0053466 @ mm10
Exon Skipping
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:24586654-24587641:-
Coord C1 exon
chr7:24587451-24587641
Coord A exon
chr7:24587158-24587242
Coord C2 exon
chr7:24586654-24586817
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTTTCGTCTTTTTCTCCAGGTT
3' ss Score
12.18
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGATGGGAGGAGGGGATGGAAGTGAAGCTGGGCCCTACGGCTCGGCAATCTCCTTCCCGCTCTTCTCTCCTCCAACGGCGTCCCAGCGCCCGCTGGGAGGTGCAGGTCCGAGGGCTACAAGGTAGCTCACGAGGCTTAATTGAGACGGGAGGGTTCCGGAGCCCCACCCCCGGGGAGGGACCGCCCTGCAG
Seq A exon
GTTTCCCTAATTCTCTGAGTCCCCAGTTCTATGCCAGAGATGCGATTTAGCGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
Seq C2 exon
GCCCGCACCCCTGTCTCCATGAACTTGTTAACCACTGGCGCCATCCTCGCCCCTTGCCCAGCTGCCCCTTGGTCCCTCTGCCAGCAAGATGCTGGGTGGAAGCGTGAAGTCCGAGGTCAGGGCCTCGGAACCTAGTCCCACCTGTCAGGACCCGGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGCTCTTCTCTCCTCC
R:
ATGGCGCCAGTGGTTAACAAG
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types